J4_4BTS_006
3D structure
- PDB id
- 4BTS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AAG*CGAAAG*CUAUAAACUAUA*UU
- Length
- 23 nucleotides
- Bulged bases
- 4BTS|1|CA|A|617, 4BTS|1|CA|A|1004, 4BTS|1|CA|U|1007, 4BTS|1|CA|U|1009
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4BTS_006 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.132
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4BTS|1|CA|A|616
4BTS|1|CA|A|617
4BTS|1|CA|G|618
*
4BTS|1|CA|C|953
4BTS|1|CA|G|954
4BTS|1|CA|A|955
4BTS|1|CA|A|956
4BTS|1|CA|A|957
4BTS|1|CA|G|958
*
4BTS|1|CA|C|999
4BTS|1|CA|U|1000
4BTS|1|CA|A|1001
4BTS|1|CA|U|1002
4BTS|1|CA|A|1003
4BTS|1|CA|A|1004
4BTS|1|CA|A|1005
4BTS|1|CA|C|1006
4BTS|1|CA|U|1007
4BTS|1|CA|A|1008
4BTS|1|CA|U|1009
4BTS|1|CA|A|1010
*
4BTS|1|CA|U|1075
4BTS|1|CA|U|1076
Current chains
- Chain CA
- 18S ribosomal RNA
Nearby chains
- Chain C5
- 40S RIBOSOMAL PROTEIN RPS26E
- Chain CH
- 40S RIBOSOMAL PROTEIN RPS22E
- Chain CK
- 40S RIBOSOMAL PROTEIN RPS14E
- Chain CL
- 40S RIBOSOMAL PROTEIN S12
- Chain CO
- 40S RIBOSOMAL PROTEIN RPS13E
- Chain CQ
- 40S RIBOSOMAL PROTEIN RPS11E
Coloring options: