J4_4CSU_005

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4CSU|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4CSU_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1398

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|G|1310
4CSU|1|B|G|1311
4CSU|1|B|U|1312
4CSU|1|B|U|1313
4CSU|1|B|C|1314
*
4CSU|1|B|G|1338
4CSU|1|B|G|1339
4CSU|1|B|U|1340
4CSU|1|B|G|1341
4CSU|1|B|A|1342
4CSU|1|B|G|1343
*
4CSU|1|B|C|1404
4CSU|1|B|U|1405
*
4CSU|1|B|A|1597
4CSU|1|B|A|1598
4CSU|1|B|U|1599
4CSU|1|B|C|1600
4CSU|1|B|G|1601
4CSU|1|B|U|1602
4CSU|1|B|A|1603
4CSU|1|B|C|1604

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

50S RIBOSOMAL PROTEIN L34

Chain T

50S RIBOSOMAL PROTEIN L23