J4_4CSU_008

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4CSU_008 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.1142

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4CSU|1|B|A|1772
4CSU|1|B|A|1773
4CSU|1|B|C|1774
4CSU|1|B|U|1775
4CSU|1|B|G|1776
*
4CSU|1|B|C|1788
4CSU|1|B|A|1789
4CSU|1|B|C|1790
4CSU|1|B|A|1791
4CSU|1|B|G|1792
*
4CSU|1|B|U|1827
4CSU|1|B|G|1828
4CSU|1|B|A|1829
4CSU|1|B|C|1830
*
4CSU|1|B|G|1975
4CSU|1|B|U|1976
4CSU|1|B|A|1977
4CSU|1|B|A|1978
4CSU|1|B|U|1979

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2