J4_4CSU_009

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4CSU|1|B|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4CSU_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1537

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4CSU|1|B|C|1833
4CSU|1|B|U|1834
4CSU|1|B|G|1835
*
4CSU|1|B|C|1905
4CSU|1|B|G|1906
*
4CSU|1|B|C|1924
4CSU|1|B|C|1925
4CSU|1|B|U|1926
4CSU|1|B|A|1927
4CSU|1|B|A|1928
4CSU|1|B|G|1929
4CSU|1|B|G|1930
4CSU|1|B|U|1931
4CSU|1|B|A|1932
4CSU|1|B|G|1933
*
4CSU|1|B|C|1967
4CSU|1|B|G|1968
4CSU|1|B|A|1969
4CSU|1|B|A|1970
4CSU|1|B|U|1971
4CSU|1|B|G|1972

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2