J4_4D5L_001
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGACG*CGG
- Length
- 21 nucleotides
- Bulged bases
- 4D5L|1|1|A|104, 4D5L|1|1|C|356, 4D5L|1|1|G|407
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|C|98
4D5L|1|1|A|99
4D5L|1|1|U|100
4D5L|1|1|U|101
4D5L|1|1|A|102
4D5L|1|1|A|103
4D5L|1|1|A|104
4D5L|1|1|U|105
4D5L|1|1|C|106
*
4D5L|1|1|G|355
4D5L|1|1|C|356
4D5L|1|1|C|357
*
4D5L|1|1|G|405
4D5L|1|1|U|406
4D5L|1|1|G|407
4D5L|1|1|A|408
4D5L|1|1|C|409
4D5L|1|1|G|410
*
4D5L|1|1|C|430
4D5L|1|1|G|431
4D5L|1|1|G|432
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN ES30
- Chain I
- 40S RIBOSOMAL PROTEIN ES8
- Chain L
- 40S RIBOSOMAL PROTEIN US17
- Chain X
- 40S RIBOSOMAL PROTEIN US12
Coloring options: