J4_4D5L_002
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUUAAAAAG*CGAAAG*CCAUAAACGAUG*UUC
- Length
- 30 nucleotides
- Bulged bases
- 4D5L|1|1|A|668, 4D5L|1|1|A|672, 4D5L|1|1|A|1083, 4D5L|1|1|G|1086, 4D5L|1|1|U|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|G|665
4D5L|1|1|U|666
4D5L|1|1|U|667
4D5L|1|1|A|668
4D5L|1|1|A|669
4D5L|1|1|A|670
4D5L|1|1|A|671
4D5L|1|1|A|672
4D5L|1|1|G|673
*
4D5L|1|1|C|1032
4D5L|1|1|G|1033
4D5L|1|1|A|1034
4D5L|1|1|A|1035
4D5L|1|1|A|1036
4D5L|1|1|G|1037
*
4D5L|1|1|C|1078
4D5L|1|1|C|1079
4D5L|1|1|A|1080
4D5L|1|1|U|1081
4D5L|1|1|A|1082
4D5L|1|1|A|1083
4D5L|1|1|A|1084
4D5L|1|1|C|1085
4D5L|1|1|G|1086
4D5L|1|1|A|1087
4D5L|1|1|U|1088
4D5L|1|1|G|1089
*
4D5L|1|1|U|1160
4D5L|1|1|U|1161
4D5L|1|1|C|1162
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain C
- 40S RIBOSOMAL PROTEIN ES28
- Chain L
- 40S RIBOSOMAL PROTEIN US17
- Chain N
- 40S RIBOSOMAL PROTEIN US15
- Chain W
- 40S RIBOSOMAL PROTEIN US8
- Chain X
- 40S RIBOSOMAL PROTEIN US12
- Chain a
- 40S RIBOSOMAL PROTEIN US2
Coloring options: