Loop J4_4D5L

3D structure

PDB id: 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å

Loop

Sequence: UGGA*UACACUG*CGUGAUGGGGAUCG*CAUGAACGAGGAA
Length: 38 nucleotides
Bulged bases: 4D5L|1|1|U|1535, 4D5L|1|1|G|1600, 4D5L|1|1|U|1602, 4D5L|1|1|G|1603
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4D5L|1|1|U|1225
4D5L|1|1|G|1226
4D5L|1|1|G|1227
4D5L|1|1|A|1228
*
4D5L|1|1|U|1530
4D5L|1|1|A|1531
4D5L|1|1|C|1532
4D5L|1|1|A|1533
4D5L|1|1|C|1534
4D5L|1|1|U|1535
4D5L|1|1|G|1536
*
4D5L|1|1|C|1597
4D5L|1|1|G|1598
4D5L|1|1|U|1599
4D5L|1|1|G|1600
4D5L|1|1|A|1601
4D5L|1|1|U|1602
4D5L|1|1|G|1603
4D5L|1|1|G|1604
4D5L|1|1|G|1605
4D5L|1|1|G|1606
4D5L|1|1|A|1607
4D5L|1|1|U|1608
4D5L|1|1|C|1609
4D5L|1|1|G|1610
*
4D5L|1|1|C|1629
4D5L|1|1|A|1630
4D5L|1|1|U|1631
4D5L|1|1|G|1632
4D5L|1|1|A|1633
4D5L|1|1|A|1634
4D5L|1|1|C|1635
4D5L|1|1|G|1636
4D5L|1|1|A|1637
4D5L|1|1|G|1638
4D5L|1|1|G|1639
4D5L|1|1|A|1640
4D5L|1|1|A|1641

Current chains

Chain 1: 18S RRNA 2

Nearby chains

Chain F: 40S RIBOSOMAL PROTEIN ES31
Chain Q: 40S RIBOSOMAL PROTEIN US9
Chain S: 40S RIBOSOMAL PROTEIN US13
Chain T: 40S RIBOSOMAL PROTEIN ES19
Chain Z: 40S RIBOSOMAL PROTEIN ES25

J4_4D5L_003