J4_4D5Y_006
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4D5Y_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1291
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
4D5Y|1|2|G|3603
4D5Y|1|2|A|3604
4D5Y|1|2|C|3605
4D5Y|1|2|U|3606
4D5Y|1|2|G|3607
*
4D5Y|1|2|C|3619
4D5Y|1|2|A|3620
4D5Y|1|2|A|3621
4D5Y|1|2|A|3622
4D5Y|1|2|G|3623
*
4D5Y|1|2|U|3659
4D5Y|1|2|G|3660
4D5Y|1|2|A|3661
4D5Y|1|2|U|3662
4D5Y|1|2|U|3663
*
4D5Y|1|2|A|3790
4D5Y|1|2|U|3791
4D5Y|1|2|G|3792
4D5Y|1|2|A|3793
4D5Y|1|2|A|3794
4D5Y|1|2|C|3795
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN UL2
- Chain n
- 60S RIBOSOMAL PROTEIN EL41
- Chain p
- 60S RIBOSOMAL PROTEIN EL43
Coloring options: