J4_4D5Y_007

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUG*CGG*CUUAAGGUAG*UGAAUG

Length

22 nucleotides

Bulged bases

4D5Y|1|2|U|3787

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|C|3665
4D5Y|1|2|U|3666
4D5Y|1|2|G|3667
*
4D5Y|1|2|C|3721
4D5Y|1|2|G|3722
4D5Y|1|2|G|3723
*
4D5Y|1|2|C|3740
4D5Y|1|2|U|3741
4D5Y|1|2|U|3742
4D5Y|1|2|A|3743
4D5Y|1|2|A|3744
4D5Y|1|2|G|3745
4D5Y|1|2|G|3746
4D5Y|1|2|U|3747
4D5Y|1|2|A|3748
4D5Y|1|2|G|3749
*
4D5Y|1|2|U|3783
4D5Y|1|2|G|3784
4D5Y|1|2|A|3785
4D5Y|1|2|A|3786
4D5Y|1|2|U|3787
4D5Y|1|2|G|3788

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN UL2

Chain n

60S RIBOSOMAL PROTEIN EL41