J4_4D67_004
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UC*GGUCAG*UC*GGCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 4D67|1|2|C|2414, 4D67|1|2|A|2415
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D67|1|2|U|2386
4D67|1|2|C|2387
*
4D67|1|2|G|2411
4D67|1|2|G|2412
4D67|1|2|U|2413
4D67|1|2|C|2414
4D67|1|2|A|2415
4D67|1|2|G|2416
*
4D67|1|2|U|2515
4D67|1|2|C|2516
*
4D67|1|2|G|2754
4D67|1|2|G|2755
4D67|1|2|C|2756
4D67|1|2|C|2757
4D67|1|2|G|2758
4D67|1|2|U|2759
4D67|1|2|A|2760
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S RIBOSOMAL PROTEIN L19
- Chain X
- 60S RIBOSOMAL PROTEIN L23A
- Chain g
- 60S RIBOSOMAL PROTEIN L34
- Chain k
- 60S RIBOSOMAL PROTEIN L38
- Chain l
- 60S RIBOSOMAL PROTEIN L39
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