J4_4D67_007

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUG*CGG*CUUAAGGUAG*UGAAUG

Length

22 nucleotides

Bulged bases

4D67|1|2|U|3787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|3665
4D67|1|2|U|3666
4D67|1|2|G|3667
*
4D67|1|2|C|3721
4D67|1|2|G|3722
4D67|1|2|G|3723
*
4D67|1|2|C|3740
4D67|1|2|U|3741
4D67|1|2|U|3742
4D67|1|2|A|3743
4D67|1|2|A|3744
4D67|1|2|G|3745
4D67|1|2|G|3746
4D67|1|2|U|3747
4D67|1|2|A|3748
4D67|1|2|G|3749
*
4D67|1|2|U|3783
4D67|1|2|G|3784
4D67|1|2|A|3785
4D67|1|2|A|3786
4D67|1|2|U|3787
4D67|1|2|G|3788

Current chains

Chain 2

28S RRNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L8

Chain n

60S RIBOSOMAL PROTEIN L41