J4_4D67_009

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUAAUC*GUUC*GUG*CGCC

Length

17 nucleotides

Bulged bases

4D67|1|2|A|4549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|G|4547
4D67|1|2|U|4548
4D67|1|2|A|4549
4D67|1|2|A|4550
4D67|1|2|U|4551
4D67|1|2|C|4552
*
4D67|1|2|G|4578
4D67|1|2|U|4579
4D67|1|2|U|4580
4D67|1|2|C|4581
*
4D67|1|2|G|4636
4D67|1|2|U|4637
4D67|1|2|G|4638
*
4D67|1|2|C|4672
4D67|1|2|G|4673
4D67|1|2|C|4674
4D67|1|2|C|4675

Current chains

Chain 2

28S RRNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain O

60S RIBOSOMAL PROTEIN L13A

Chain V

60S RIBOSOMAL PROTEIN L23