J4_4D67_010

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCAAGUC*GCCCAGCCC*GAC*GGUAGCG

Length

26 nucleotides

Bulged bases

4D67|1|2|U|197, 4D67|1|2|C|213, 4D67|1|2|C|214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|192
4D67|1|2|C|193
4D67|1|2|A|194
4D67|1|2|A|195
4D67|1|2|G|196
4D67|1|2|U|197
4D67|1|2|C|198
*
4D67|1|2|G|211
4D67|1|2|C|212
4D67|1|2|C|213
4D67|1|2|C|214
4D67|1|2|A|215
4D67|1|2|G|216
4D67|1|2|C|217
4D67|1|2|C|218
4D67|1|2|C|219
*
4D67|1|2|G|223
4D67|1|2|A|224
4D67|1|2|C|225
*
4D67|1|2|G|237
4D67|1|2|G|238
4D67|1|2|U|239
4D67|1|2|A|240
4D67|1|2|G|241
4D67|1|2|C|242
4D67|1|2|G|243

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S RIBOSOMAL PROTEIN L4

Chain Y

60S RIBOSOMAL PROTEIN L26

Chain j

60S RIBOSOMAL PROTEIN L37