J4_4D67_011

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GG*UGUGAAGGGCAG*CGUGCCUUGGAAAG*UC

Length

30 nucleotides

Bulged bases

4D67|1|2|A|2673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|G|2595
4D67|1|2|G|2596
*
4D67|1|2|U|2614
4D67|1|2|G|2615
4D67|1|2|U|2616
4D67|1|2|G|2617
4D67|1|2|A|2618
4D67|1|2|A|2619
4D67|1|2|G|2620
4D67|1|2|G|2621
4D67|1|2|G|2622
4D67|1|2|C|2623
4D67|1|2|A|2624
4D67|1|2|G|2625
*
4D67|1|2|C|2662
4D67|1|2|G|2663
4D67|1|2|U|2664
4D67|1|2|G|2665
4D67|1|2|C|2666
4D67|1|2|C|2667
4D67|1|2|U|2668
4D67|1|2|U|2669
4D67|1|2|G|2670
4D67|1|2|G|2671
4D67|1|2|A|2672
4D67|1|2|A|2673
4D67|1|2|A|2674
4D67|1|2|G|2675
*
4D67|1|2|U|2695
4D67|1|2|C|2696

Current chains

Chain 2

28S RRNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN L19

Chain U

60S RIBOSOMAL PROTEIN L22

Chain g

60S RIBOSOMAL PROTEIN L34

Chain k

60S RIBOSOMAL PROTEIN L38