J4_4DR4_003
3D structure
- PDB id
- 4DR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.97 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4DR4|1|A|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4DR4_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0549
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4DR4|1|A|G|575
4DR4|1|A|G|576
4DR4|1|A|G|577
*
4DR4|1|A|C|764
4DR4|1|A|G|765
4DR4|1|A|A|766
4DR4|1|A|A|767
4DR4|1|A|A|768
4DR4|1|A|G|769
*
4DR4|1|A|C|810
4DR4|1|A|C|811
4DR4|1|A|C|812
4DR4|1|A|U|813
4DR4|1|A|A|814
4DR4|1|A|A|815
4DR4|1|A|A|816
4DR4|1|A|C|817
4DR4|1|A|G|818
4DR4|1|A|A|819
4DR4|1|A|U|820
4DR4|1|A|G|821
*
4DR4|1|A|C|879
4DR4|1|A|C|880
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
Coloring options: