3D structure

PDB id
4DR6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
4DR6|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4DR6_003 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.036
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4DR6|1|A|G|575
4DR6|1|A|G|576
4DR6|1|A|G|577
*
4DR6|1|A|C|764
4DR6|1|A|G|765
4DR6|1|A|A|766
4DR6|1|A|A|767
4DR6|1|A|A|768
4DR6|1|A|G|769
*
4DR6|1|A|C|810
4DR6|1|A|C|811
4DR6|1|A|C|812
4DR6|1|A|U|813
4DR6|1|A|A|814
4DR6|1|A|A|815
4DR6|1|A|A|816
4DR6|1|A|C|817
4DR6|1|A|G|818
4DR6|1|A|A|819
4DR6|1|A|U|820
4DR6|1|A|G|821
*
4DR6|1|A|C|879
4DR6|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:


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