3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
4DR7|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4DR7_003 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0599
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4DR7|1|A|G|575
4DR7|1|A|G|576
4DR7|1|A|G|577
*
4DR7|1|A|C|764
4DR7|1|A|G|765
4DR7|1|A|A|766
4DR7|1|A|A|767
4DR7|1|A|A|768
4DR7|1|A|G|769
*
4DR7|1|A|C|810
4DR7|1|A|C|811
4DR7|1|A|C|812
4DR7|1|A|U|813
4DR7|1|A|A|814
4DR7|1|A|A|815
4DR7|1|A|A|816
4DR7|1|A|C|817
4DR7|1|A|G|818
4DR7|1|A|A|819
4DR7|1|A|U|820
4DR7|1|A|G|821
*
4DR7|1|A|C|879
4DR7|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:


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