J4_4GKJ_003
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4GKJ|1|A|A|798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4GKJ_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.047
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4GKJ|1|A|G|558
4GKJ|1|A|G|559
4GKJ|1|A|G|560
*
4GKJ|1|A|C|747
4GKJ|1|A|G|748
4GKJ|1|A|A|749
4GKJ|1|A|A|750
4GKJ|1|A|A|751
4GKJ|1|A|G|752
*
4GKJ|1|A|C|793
4GKJ|1|A|C|794
4GKJ|1|A|C|795
4GKJ|1|A|U|796
4GKJ|1|A|A|797
4GKJ|1|A|A|798
4GKJ|1|A|A|799
4GKJ|1|A|C|800
4GKJ|1|A|G|801
4GKJ|1|A|A|802
4GKJ|1|A|U|803
4GKJ|1|A|G|804
*
4GKJ|1|A|C|856
4GKJ|1|A|C|857
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
Coloring options: