J4_4GKK_001

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4GKK|1|A|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4GKK_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0553

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4GKK|1|A|G|108
4GKK|1|A|A|109
4GKK|1|A|G|110
4GKK|1|A|U|111
4GKK|1|A|A|112
4GKK|1|A|A|113
4GKK|1|A|C|114
4GKK|1|A|G|115
*
4GKK|1|A|U|234
4GKK|1|A|C|235
*
4GKK|1|A|G|281
4GKK|1|A|U|282
4GKK|1|A|A|283
4GKK|1|A|G|284
*
4GKK|1|A|C|306
4GKK|1|A|C|307

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17