J4_4IO9_002
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAG*CGGAG*CGAGU*GGCGGCAUUAG
- Length
- 25 nucleotides
- Bulged bases
- 4IO9|1|X|C|664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4IO9_002 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.2587
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69347.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4IO9|1|X|C|611
4IO9|1|X|G|612
4IO9|1|X|A|613
4IO9|1|X|G|614
*
4IO9|1|X|C|635
4IO9|1|X|G|636
4IO9|1|X|G|637
4IO9|1|X|A|638
4IO9|1|X|G|639
*
4IO9|1|X|C|646
4IO9|1|X|G|647
4IO9|1|X|A|648
4IO9|1|X|G|649
4IO9|1|X|U|650
*
4IO9|1|X|G|659
4IO9|1|X|G|660
4IO9|1|X|C|661
4IO9|1|X|G|662
4IO9|1|X|G|663
4IO9|1|X|C|664
4IO9|1|X|A|665
4IO9|1|X|U|666
4IO9|1|X|U|667
4IO9|1|X|A|668
4IO9|1|X|G|669
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
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