J4_4IO9_004

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

4IO9|1|X|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4IO9_004 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.0652

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4IO9|1|X|G|1323
4IO9|1|X|G|1324
4IO9|1|X|U|1325
4IO9|1|X|U|1326
4IO9|1|X|C|1327
*
4IO9|1|X|G|1351
4IO9|1|X|G|1352
4IO9|1|X|A|1353
4IO9|1|X|A|1354
4IO9|1|X|A|1355
4IO9|1|X|G|1356
*
4IO9|1|X|C|1417
4IO9|1|X|C|1418
*
4IO9|1|X|G|1613
4IO9|1|X|C|1614
4IO9|1|X|C|1615
4IO9|1|X|C|1616
4IO9|1|X|G|1617
4IO9|1|X|U|1618
4IO9|1|X|A|1619
4IO9|1|X|C|1620

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23