J4_4IO9_009

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4IO9_009 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.0658

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4IO9|1|X|G|2622
4IO9|1|X|A|2623
4IO9|1|X|G|2624
4IO9|1|X|U|2625
*
4IO9|1|X|A|2653
4IO9|1|X|A|2654
4IO9|1|X|C|2655
*
4IO9|1|X|G|2711
4IO9|1|X|G|2712
4IO9|1|X|A|2713
4IO9|1|X|A|2714
4IO9|1|X|C|2715
4IO9|1|X|G|2716
*
4IO9|1|X|C|2748
4IO9|1|X|A|2749
4IO9|1|X|G|2750
4IO9|1|X|C|2751

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14