J4_4IOA_009
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGU*AAC*GGAACG*CAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_80169.1
- Basepair signature
- cWW-cWW-F-cWW-tHS-cWW-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4IOA|1|X|G|2622
4IOA|1|X|A|2623
4IOA|1|X|G|2624
4IOA|1|X|U|2625
*
4IOA|1|X|A|2653
4IOA|1|X|A|2654
4IOA|1|X|C|2655
*
4IOA|1|X|G|2711
4IOA|1|X|G|2712
4IOA|1|X|A|2713
4IOA|1|X|A|2714
4IOA|1|X|C|2715
4IOA|1|X|G|2716
*
4IOA|1|X|C|2748
4IOA|1|X|A|2749
4IOA|1|X|G|2750
4IOA|1|X|C|2751
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain H
- 50S ribosomal protein L14
Coloring options: