3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAGU*AAC*GGAACG*CAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_80169.1
Basepair signature
cWW-cWW-F-cWW-tHS-cWW-F-cWW-F-cWW
Number of instances in this motif group
1

Unit IDs

4IOA|1|X|G|2622
4IOA|1|X|A|2623
4IOA|1|X|G|2624
4IOA|1|X|U|2625
*
4IOA|1|X|A|2653
4IOA|1|X|A|2654
4IOA|1|X|C|2655
*
4IOA|1|X|G|2711
4IOA|1|X|G|2712
4IOA|1|X|A|2713
4IOA|1|X|A|2714
4IOA|1|X|C|2715
4IOA|1|X|G|2716
*
4IOA|1|X|C|2748
4IOA|1|X|A|2749
4IOA|1|X|G|2750
4IOA|1|X|C|2751

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain G
50S ribosomal protein L13
Chain H
50S ribosomal protein L14

Coloring options:

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