J4_4KHP_003
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4KHP|1|A|A|799, 4KHP|1|A|C|801, 4KHP|1|A|A|803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4KHP_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0434
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4KHP|1|A|G|559
4KHP|1|A|G|560
4KHP|1|A|G|561
*
4KHP|1|A|C|748
4KHP|1|A|G|749
4KHP|1|A|A|750
4KHP|1|A|A|751
4KHP|1|A|A|752
4KHP|1|A|G|753
*
4KHP|1|A|C|794
4KHP|1|A|C|795
4KHP|1|A|C|796
4KHP|1|A|U|797
4KHP|1|A|A|798
4KHP|1|A|A|799
4KHP|1|A|A|800
4KHP|1|A|C|801
4KHP|1|A|G|802
4KHP|1|A|A|803
4KHP|1|A|U|804
4KHP|1|A|G|805
*
4KHP|1|A|C|857
4KHP|1|A|C|858
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain H
- 30S Ribosomal protein S8
- Chain L
- 30S Ribosomal protein S12
- Chain O
- 30S Ribosomal protein S15
- Chain Q
- 30S Ribosomal protein S17
Coloring options: