3D structure

PDB id
4KVB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17
Experimental method
X-RAY DIFFRACTION
Resolution
4.2 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
4KVB|1|A|G|576
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4KVB_003 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0877
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4KVB|1|A|G|575
4KVB|1|A|G|576
4KVB|1|A|G|577
*
4KVB|1|A|C|764
4KVB|1|A|G|765
4KVB|1|A|A|766
4KVB|1|A|A|767
4KVB|1|A|A|768
4KVB|1|A|G|769
*
4KVB|1|A|C|810
4KVB|1|A|C|811
4KVB|1|A|C|812
4KVB|1|A|U|813
4KVB|1|A|A|814
4KVB|1|A|A|815
4KVB|1|A|A|816
4KVB|1|A|C|817
4KVB|1|A|G|818
4KVB|1|A|A|819
4KVB|1|A|U|820
4KVB|1|A|G|821
*
4KVB|1|A|C|879
4KVB|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15

Coloring options:


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