J4_4KZZ_003
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4KZZ|1|j|U|8, 4KZZ|1|j|U|46, 4KZZ|1|j|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4KZZ_003 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.1765
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4KZZ|1|j|G|7
4KZZ|1|j|U|8
4KZZ|1|j|G|9
4KZZ|1|j|G|10
*
4KZZ|1|j|U|24
4KZZ|1|j|G|25
4KZZ|1|j|C|26
*
4KZZ|1|j|G|42
4KZZ|1|j|A|43
4KZZ|1|j|G|44
4KZZ|1|j|G|45
4KZZ|1|j|U|46
4KZZ|1|j|C|47
4KZZ|1|j|G|48
*
4KZZ|1|j|C|64
4KZZ|1|j|C|65
Current chains
- Chain j
- initiator Met-RNA-i
Nearby chains
- Chain S
- 40S Ribosomal Protein S18
- Chain i
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: