J4_4L47_001

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4L47|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4L47_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0629

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4L47|1|QA|G|115
4L47|1|QA|A|116
4L47|1|QA|G|117
4L47|1|QA|U|118
4L47|1|QA|A|119
4L47|1|QA|A|120
4L47|1|QA|C|121
4L47|1|QA|G|122
*
4L47|1|QA|U|239
4L47|1|QA|C|240
*
4L47|1|QA|G|286
4L47|1|QA|U|287
4L47|1|QA|A|288
4L47|1|QA|G|289
*
4L47|1|QA|C|311
4L47|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17