3D structure

PDB id
4L71 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
4L71|1|QA|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4L71_001 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0731
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4L71|1|QA|G|115
4L71|1|QA|A|116
4L71|1|QA|G|117
4L71|1|QA|U|118
4L71|1|QA|A|119
4L71|1|QA|A|120
4L71|1|QA|C|121
4L71|1|QA|G|122
*
4L71|1|QA|U|239
4L71|1|QA|C|240
*
4L71|1|QA|G|286
4L71|1|QA|U|287
4L71|1|QA|A|288
4L71|1|QA|G|289
*
4L71|1|QA|C|311
4L71|1|QA|C|312

Current chains

Chain QA
16S Ribosomal RNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QP
30S ribosomal protein S16
Chain QQ
30S ribosomal protein S17

Coloring options:


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