J4_4L71_019

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4L71|1|YA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4L71_019 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0906

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4L71|1|YA|C|268
4L71|1|YA|U|269
*
4L71|1|YA|G|370
4L71|1|YA|A|371
4L71|1|YA|G|372
4L71|1|YA|U|373
4L71|1|YA|A|374
4L71|1|YA|C|375
*
4L71|1|YA|G|399
4L71|1|YA|G|400
4L71|1|YA|A|401
4L71|1|YA|A|402
4L71|1|YA|U|403
4L71|1|YA|C|404
4L71|1|YA|U|405
4L71|1|YA|G|406
*
4L71|1|YA|U|421
4L71|1|YA|A|422
4L71|1|YA|A|423
4L71|1|YA|G|424

Current chains

Chain YA

23S Ribosomal RNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9