J4_9DFE_001

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9DFE|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|1A|C|268
9DFE|1|1A|U|269
*
9DFE|1|1A|G|370
9DFE|1|1A|A|371
9DFE|1|1A|G|372
9DFE|1|1A|U|373
9DFE|1|1A|A|374
9DFE|1|1A|C|375
*
9DFE|1|1A|G|399
9DFE|1|1A|G|400
9DFE|1|1A|A|401
9DFE|1|1A|A|402
9DFE|1|1A|U|403
9DFE|1|1A|C|404
9DFE|1|1A|U|405
9DFE|1|1A|G|406
*
9DFE|1|1A|U|421
9DFE|1|1A|A|422
9DFE|1|1A|A|423
9DFE|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9