J4_4L71_021
3D structure
- PDB id
- 4L71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 4L71|1|YA|G|1271, 4L71|1|YA|A|1272, 4L71|1|YA|U|1273, 4L71|1|YA|G|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4L71_021 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0911
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4L71|1|YA|C|1270
4L71|1|YA|G|1271
4L71|1|YA|A|1272
4L71|1|YA|U|1273
4L71|1|YA|A|1274
4L71|1|YA|A|1275
4L71|1|YA|A|1276
*
4L71|1|YA|U|1294
4L71|1|YA|C|1295
*
4L71|1|YA|G|1645
4L71|1|YA|C|1646
4L71|1|YA|G|1647
4L71|1|YA|C|1648
*
4L71|1|YA|G|2009
4L71|1|YA|G|2010
Current chains
- Chain YA
- 23S Ribosomal RNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YR
- 50S ribosomal protein L17
- Chain YW
- 50S ribosomal protein L22
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