Motif J4_19484.2 Version J4_19484.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 4-7 | 5-6 | 7-8 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_9H3G_003 | 9H3G | 0.1914 | 2 | A | LSU rRNA | C | 1460 | A | 1462 | A | 1463 | A | 1465 | U | 1466 | * | A | 1484 | G | 1485 | * | C | 1879 | G | 1880 | A | 1881 | U | 1882 | * | A | 2350 | G | 2351 | cWW | ntSs | cWW | cWW | cWW |
| 2 | J4_8OI5_003 | 8OI5 | 0.0840 | 2 | 1 | LSU rRNA | C | 1447 | A | 1449 | A | 1450 | A | 1452 | U | 1453 | * | A | 1471 | G | 1472 | * | U | 1873 | G | 1874 | A | 1875 | U | 1876 | * | A | 2330 | G | 2331 | cWW | ntSs | cWW | cWW | cWW |
| 3 | J4_9SUM_003 | 9SUM | 0.0000 | 2 | A | LSU rRNA | C | 1394 | A | 1396 | A | 1397 | A | 1399 | U | 1400 | * | A | 1418 | G | 1419 | * | U | 1819 | G | 1820 | A | 1821 | U | 1822 | * | A | 2267 | G | 2268 | cWW | ntSs | cWW | cWW | cWW |
| 4 | J4_9PN5_003 | 9PN5 | 0.0698 | 2 | A1 | LSU rRNA | C | 1451 | A | 1453 | A | 1454 | A | 1456 | U | 1457 | * | A | 1475 | G | 1476 | * | U | 1877 | G | 1878 | A | 1879 | U | 1880 | * | A | 2352 | G | 2353 | cWW | ntSs | cWW | cWW | cWW |
| 5 | J4_9AXU_003 | 9AXU | 0.1120 | 2 | 2 | LSU rRNA | C | 1485 | A | 1487 | A | 1488 | A | 1490 | U | 1491 | * | A | 1509 | G | 1510 | * | U | 1932 | G | 1933 | A | 1934 | U | 1935 | * | A | 2440 | G | 2441 | cWW | ntSs | cWW | cWW | cWW |
| 6 | J4_4WF9_004 | 4WF9 | 0.8303 | 1 | X | LSU rRNA | C | 1308 | A | 1310 | A | 1311 | A | 1312 | G | 1313 | * | C | 1331 | C | 1332 | * | G | 1689 | A | 1690 | G | 1691 | C | 1692 | * | G | 2036 | G | 2037 | cWW | cWW | cWW | cWW | |
| 7 | J4_7A0S_004 | 7A0S | 1.0023 | 2 | X | LSU rRNA | C | 1283 | A | 1285 | A | 1287 | A | 1288 | A | 1289 | * | U | 1307 | C | 1308 | * | G | 1662 | C | 1663 | G | 1664 | C | 1665 | * | G | 1992 | G | 1993 | cWW | tSs | cWW | cWW | cWW |
| 8 | J4_8B0X_007 | 8B0X | 0.9825 | 2 | a | LSU rRNA | C | 1272 | G | 1273 | A | 1274 | A | 1277 | A | 1278 | * | U | 1296 | C | 1297 | * | G | 1647 | C | 1648 | U | 1649 | U | 1650 | * | A | 2013 | G | 2014 | cWW | ntSs | cWW | cWW | cWW |
| 9 | J4_9DFE_003 | 9DFE | 0.9867 | 2 | 1A | LSU rRNA | C | 1270 | G | 1271 | A | 1272 | A | 1275 | A | 1276 | * | U | 1294 | C | 1295 | * | G | 1645 | C | 1646 | G | 1647 | C | 1648 | * | G | 2009 | G | 2010 | cWW | ntSs | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAUAU*AG*UGAU*AG | 4 |
| CGAUAAA*UC*GCGC*GG | 2 |
| CAAAUAU*AG*CGAU*AG | 1 |
| CGAAAG*CC*GAGC*GG | 1 |
| CGAUAAA*UC*GCUU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAUA**GA* | 5 |
| GAUAA**CG* | 2 |
| GAAA**AG* | 1 |
| GAUAA**CU* | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Heat map statistics
- Min 0.07 | Avg 0.55 | Max 1.03
Coloring options: