J4_4LEL_005

3D structure

PDB id

4LEL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4LEL|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LEL_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1078

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4LEL|1|RA|C|268
4LEL|1|RA|U|269
*
4LEL|1|RA|G|370
4LEL|1|RA|A|371
4LEL|1|RA|G|372
4LEL|1|RA|U|373
4LEL|1|RA|A|374
4LEL|1|RA|C|375
*
4LEL|1|RA|G|399
4LEL|1|RA|G|400
4LEL|1|RA|A|401
4LEL|1|RA|A|402
4LEL|1|RA|U|403
4LEL|1|RA|C|404
4LEL|1|RA|U|405
4LEL|1|RA|G|406
*
4LEL|1|RA|U|421
4LEL|1|RA|A|422
4LEL|1|RA|A|423
4LEL|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9