J4_4LF7_001

3D structure

PDB id

4LF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4LF7|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LF7_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0353

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4LF7|1|A|G|115
4LF7|1|A|A|116
4LF7|1|A|G|117
4LF7|1|A|U|118
4LF7|1|A|A|119
4LF7|1|A|A|120
4LF7|1|A|C|121
4LF7|1|A|G|122
*
4LF7|1|A|U|239
4LF7|1|A|C|240
*
4LF7|1|A|G|286
4LF7|1|A|U|287
4LF7|1|A|A|288
4LF7|1|A|G|289
*
4LF7|1|A|C|311
4LF7|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12

Chain P

ribosomal protein S16

Chain Q

ribosomal protein S17