J4_4LFB_002

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_36568.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4LFB|1|A|G|142
4LFB|1|A|A|143
4LFB|1|A|G|144
*
4LFB|1|A|C|178
4LFB|1|A|A|179
4LFB|1|A|U|180
4LFB|1|A|G|181
4LFB|1|A|U|182
4LFB|1|A|G|183
*
4LFB|1|A|C|194
4LFB|1|A|A|195
4LFB|1|A|A|196
4LFB|1|A|A|197
4LFB|1|A|G|198
*
4LFB|1|A|C|219
4LFB|1|A|G|220
4LFB|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20