3D structure

PDB id
4LFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
4LFC|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4LFC_003 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0409
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4LFC|1|A|G|575
4LFC|1|A|G|576
4LFC|1|A|G|577
*
4LFC|1|A|C|764
4LFC|1|A|G|765
4LFC|1|A|A|766
4LFC|1|A|A|767
4LFC|1|A|A|768
4LFC|1|A|G|769
*
4LFC|1|A|C|810
4LFC|1|A|C|811
4LFC|1|A|C|812
4LFC|1|A|U|813
4LFC|1|A|A|814
4LFC|1|A|A|815
4LFC|1|A|A|816
4LFC|1|A|C|817
4LFC|1|A|G|818
4LFC|1|A|A|819
4LFC|1|A|U|820
4LFC|1|A|G|821
*
4LFC|1|A|C|879
4LFC|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
ribosomal protein S8
Chain L
ribosomal protein S12
Chain O
ribosomal protein S15
Chain Q
ribosomal protein S17

Coloring options:


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