J4_4LFZ_020

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4LFZ|1|YA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LFZ_020 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1049

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4LFZ|1|YA|C|268
4LFZ|1|YA|U|269
*
4LFZ|1|YA|G|370
4LFZ|1|YA|A|371
4LFZ|1|YA|G|372
4LFZ|1|YA|U|373
4LFZ|1|YA|A|374
4LFZ|1|YA|C|375
*
4LFZ|1|YA|G|399
4LFZ|1|YA|G|400
4LFZ|1|YA|A|401
4LFZ|1|YA|A|402
4LFZ|1|YA|U|403
4LFZ|1|YA|C|404
4LFZ|1|YA|U|405
4LFZ|1|YA|G|406
*
4LFZ|1|YA|U|421
4LFZ|1|YA|A|422
4LFZ|1|YA|A|423
4LFZ|1|YA|G|424

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9