J4_4LNT_001

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4LNT|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LNT_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0639

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4LNT|1|QA|G|115
4LNT|1|QA|A|116
4LNT|1|QA|G|117
4LNT|1|QA|U|118
4LNT|1|QA|A|119
4LNT|1|QA|A|120
4LNT|1|QA|C|121
4LNT|1|QA|G|122
*
4LNT|1|QA|U|239
4LNT|1|QA|C|240
*
4LNT|1|QA|G|286
4LNT|1|QA|U|287
4LNT|1|QA|A|288
4LNT|1|QA|G|289
*
4LNT|1|QA|C|311
4LNT|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17