J4_4LNT_005

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4LNT|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LNT_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0872

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4LNT|1|RA|C|268
4LNT|1|RA|U|269
*
4LNT|1|RA|G|370
4LNT|1|RA|A|371
4LNT|1|RA|G|372
4LNT|1|RA|U|373
4LNT|1|RA|A|374
4LNT|1|RA|C|375
*
4LNT|1|RA|G|399
4LNT|1|RA|G|400
4LNT|1|RA|A|401
4LNT|1|RA|A|402
4LNT|1|RA|U|403
4LNT|1|RA|C|404
4LNT|1|RA|U|405
4LNT|1|RA|G|406
*
4LNT|1|RA|U|421
4LNT|1|RA|A|422
4LNT|1|RA|A|423
4LNT|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9