J4_4LNT_008

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4LNT|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LNT_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0715

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4LNT|1|RA|G|1310
4LNT|1|RA|G|1311
4LNT|1|RA|U|1312
4LNT|1|RA|U|1313
4LNT|1|RA|C|1314
*
4LNT|1|RA|G|1338
4LNT|1|RA|G|1339
4LNT|1|RA|U|1340
4LNT|1|RA|U|1341
4LNT|1|RA|A|1342
4LNT|1|RA|G|1343
*
4LNT|1|RA|C|1404
4LNT|1|RA|U|1405
*
4LNT|1|RA|A|1597
4LNT|1|RA|C|1598
4LNT|1|RA|C|1599
4LNT|1|RA|C|1600
4LNT|1|RA|G|1601
4LNT|1|RA|U|1602
4LNT|1|RA|A|1603
4LNT|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23