J4_4LNT_018
3D structure
- PDB id
- 4LNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.94 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4LNT|1|XV|U|7, 4LNT|1|XV|U|47, 4LNT|1|XV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4LNT_018 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.0991
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.26
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
4LNT|1|XV|G|6
4LNT|1|XV|U|7
4LNT|1|XV|G|8
4LNT|1|XV|G|9
*
4LNT|1|XV|C|25
4LNT|1|XV|G|26
4LNT|1|XV|U|27
*
4LNT|1|XV|A|43
4LNT|1|XV|A|44
4LNT|1|XV|G|45
4LNT|1|XV|G|46
4LNT|1|XV|U|47
4LNT|1|XV|C|48
4LNT|1|XV|G|49
*
4LNT|1|XV|C|65
4LNT|1|XV|C|66
Current chains
- Chain XV
- P-site tRNA fMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XM
- 30S ribosomal protein S13
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
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