J4_4LSK_001

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4LSK|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LSK_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0791

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4LSK|1|QA|G|115
4LSK|1|QA|A|116
4LSK|1|QA|G|117
4LSK|1|QA|U|118
4LSK|1|QA|A|119
4LSK|1|QA|A|120
4LSK|1|QA|C|121
4LSK|1|QA|G|122
*
4LSK|1|QA|U|239
4LSK|1|QA|C|240
*
4LSK|1|QA|G|286
4LSK|1|QA|U|287
4LSK|1|QA|A|288
4LSK|1|QA|G|289
*
4LSK|1|QA|C|311
4LSK|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17