J4_4LSK_004
3D structure
- PDB id
- 4LSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.48 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4LSK|1|QV|U|8, 4LSK|1|QV|U|47, 4LSK|1|QV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4LSK_004 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.1267
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4LSK|1|QV|G|7
4LSK|1|QV|U|8
4LSK|1|QV|G|9
4LSK|1|QV|G|10
*
4LSK|1|QV|C|25
4LSK|1|QV|G|26
4LSK|1|QV|U|27
*
4LSK|1|QV|A|43
4LSK|1|QV|A|44
4LSK|1|QV|G|45
4LSK|1|QV|G|46
4LSK|1|QV|U|47
4LSK|1|QV|C|48
4LSK|1|QV|G|49
*
4LSK|1|QV|C|65
4LSK|1|QV|C|66
Current chains
- Chain QV
- P-site tRNA fMet
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QM
- 30S ribosomal protein S13
- Chain R0
- 50S ribosomal protein L27
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RQ
- 50S ribosomal protein L16
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