J4_4LSK_009

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4LSK|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LSK_009 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0844

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4LSK|1|RA|U|1313
4LSK|1|RA|C|1314
*
4LSK|1|RA|G|1338
4LSK|1|RA|G|1339
4LSK|1|RA|U|1340
4LSK|1|RA|U|1341
4LSK|1|RA|A|1342
4LSK|1|RA|G|1343
*
4LSK|1|RA|C|1404
4LSK|1|RA|U|1405
*
4LSK|1|RA|A|1597
4LSK|1|RA|C|1598
4LSK|1|RA|C|1599
4LSK|1|RA|C|1600
4LSK|1|RA|G|1601
4LSK|1|RA|U|1602
4LSK|1|RA|A|1603

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23