J4_4OX9_001

3D structure

PDB id

4OX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4OX9|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4OX9_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0679

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4OX9|1|A|G|115
4OX9|1|A|A|116
4OX9|1|A|G|117
4OX9|1|A|U|118
4OX9|1|A|A|119
4OX9|1|A|A|120
4OX9|1|A|C|121
4OX9|1|A|G|122
*
4OX9|1|A|U|239
4OX9|1|A|C|240
*
4OX9|1|A|G|286
4OX9|1|A|U|287
4OX9|1|A|A|288
4OX9|1|A|G|289
*
4OX9|1|A|C|311
4OX9|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17