3D structure

PDB id
4OX9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
4OX9|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4OX9_003 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0472
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4OX9|1|A|G|575
4OX9|1|A|G|576
4OX9|1|A|G|577
*
4OX9|1|A|C|764
4OX9|1|A|G|765
4OX9|1|A|A|766
4OX9|1|A|A|767
4OX9|1|A|A|768
4OX9|1|A|G|769
*
4OX9|1|A|C|810
4OX9|1|A|C|811
4OX9|1|A|C|812
4OX9|1|A|U|813
4OX9|1|A|A|814
4OX9|1|A|A|815
4OX9|1|A|A|816
4OX9|1|A|C|817
4OX9|1|A|G|818
4OX9|1|A|A|819
4OX9|1|A|U|820
4OX9|1|A|G|821
*
4OX9|1|A|C|879
4OX9|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17
Chain Y
16S rRNA (adenine(1408)-N(1))-methyltransferase

Coloring options:


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