J4_4P6F_001
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4P6F|1|QA|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4P6F_001 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.0802
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4P6F|1|QA|G|115
4P6F|1|QA|A|116
4P6F|1|QA|G|117
4P6F|1|QA|U|118
4P6F|1|QA|A|119
4P6F|1|QA|A|120
4P6F|1|QA|C|121
4P6F|1|QA|G|122
*
4P6F|1|QA|U|239
4P6F|1|QA|C|240
*
4P6F|1|QA|G|286
4P6F|1|QA|U|287
4P6F|1|QA|A|288
4P6F|1|QA|G|289
*
4P6F|1|QA|C|311
4P6F|1|QA|C|312
Current chains
- Chain QA
- 16S ribosomal RNA
Nearby chains
- Chain QL
- 30S ribosomal protein S12
- Chain QP
- 30S ribosomal protein S16
- Chain QQ
- 30S ribosomal protein S17
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