J4_4P6F_003
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4P6F|1|QA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4P6F_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0687
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4P6F|1|QA|G|575
4P6F|1|QA|G|576
4P6F|1|QA|G|577
*
4P6F|1|QA|C|764
4P6F|1|QA|G|765
4P6F|1|QA|A|766
4P6F|1|QA|A|767
4P6F|1|QA|A|768
4P6F|1|QA|G|769
*
4P6F|1|QA|C|810
4P6F|1|QA|C|811
4P6F|1|QA|C|812
4P6F|1|QA|U|813
4P6F|1|QA|A|814
4P6F|1|QA|A|815
4P6F|1|QA|A|816
4P6F|1|QA|C|817
4P6F|1|QA|G|818
4P6F|1|QA|A|819
4P6F|1|QA|U|820
4P6F|1|QA|G|821
*
4P6F|1|QA|C|879
4P6F|1|QA|C|880
Current chains
- Chain QA
- 16S ribosomal RNA
Nearby chains
- Chain QH
- 30S ribosomal protein S8
- Chain QL
- 30S ribosomal protein S12
- Chain QO
- 30S ribosomal protein S15
- Chain QQ
- 30S ribosomal protein S17
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: