J4_4P6F_005
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4P6F|1|QW|U|8, 4P6F|1|QW|U|47, 4P6F|1|QW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4P6F_005 not in the Motif Atlas
- Homologous match to J4_4WT8_031
- Geometric discrepancy: 0.1947
- The information below is about J4_4WT8_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.26
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
4P6F|1|QW|A|7
4P6F|1|QW|U|8
4P6F|1|QW|A|9
4P6F|1|QW|G|10
*
4P6F|1|QW|C|25
4P6F|1|QW|A|26
4P6F|1|QW|G|27
*
4P6F|1|QW|C|43
4P6F|1|QW|G|44
4P6F|1|QW|U|45
4P6F|1|QW|G|46
4P6F|1|QW|U|47
4P6F|1|QW|C|48
4P6F|1|QW|C|49
*
4P6F|1|QW|G|65
4P6F|1|QW|U|66
Current chains
- Chain QW
- E-Site tRNA-Phe or A-Site tRNA-Phe
Nearby chains
- Chain QG
- 30S ribosomal protein S7
- Chain QK
- 30S ribosomal protein S11
- Chain R6
- 50S ribosomal protein L33
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