J4_4WT8_031

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

4WT8|1|C3|U|8, 4WT8|1|C3|U|47, 4WT8|1|C3|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.26

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

56

Unit IDs

4WT8|1|C3|A|7
4WT8|1|C3|U|8
4WT8|1|C3|A|9
4WT8|1|C3|G|10
*
4WT8|1|C3|C|25
4WT8|1|C3|A|26
4WT8|1|C3|G|27
*
4WT8|1|C3|C|43
4WT8|1|C3|G|44
4WT8|1|C3|U|45
4WT8|1|C3|G|46
4WT8|1|C3|U|47
4WT8|1|C3|C|48
4WT8|1|C3|C|49
*
4WT8|1|C3|G|65
4WT8|1|C3|U|66

Current chains

Chain C3

A site tNA, E site tNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain C7

50S ribosomal protein L33